PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 466aa    MW: 50378.7 Da    PI: 5.1709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-10303351355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Vradi06g14400.1 303 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 351
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17298368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-11298355No hitNo description
PROSITE profilePS5088815.485300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16301368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-7303351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVWKEDLVGS TVDEQWLRLM EDDGGTVEFV QMGGQENAMG FQHGNENILT CPSSGLSVAN  60
VNVSEMAISS VSMAKPSDVA NPFLPSSAWD PLVSLSQAQT FGGSSMVSHT DFANANSSYP  120
LVLENQGITN TSHLVQYMSD SNLGGMVPKV HSYATRGFSE MVAAASFVHH GSSDVANSGY  180
PPHYNPIKET QINGEQSQVE DSIPEEEAPG SGPSGNRRKR GLDHNSTFSP NKNAESETVK  240
DSPGRACDGS KEHEKKPKVE QNNSADLRGK QSAKQAKDNS SQSGEAPKEN FIHVRARRGQ  300
ATNSHSLAER VRREKISERM RLLQELVPGC NKITGKAVML DEIINYVQSL QQQVEFLSMK  360
LATVNPELNF DVDRILSKDI LQSRIGHGIS AYGPGINSSH TFPSGNFHGT LAGMPSTSSQ  420
FPPLPQNVLD HEFQSFYGIG YDSNTALDNL GPNDDVEQVA INGLV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505002.10.0PREDICTED: transcription factor bHLH74
RefseqXP_014505003.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A0S3RPL90.0A0A0S3RPL9_PHAAN; Uncharacterized protein
STRINGGLYMA14G10180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-78bHLH family protein